Holy Cross College offers diverse academic programs organized under five academic schools, designed to prepare students for professional excellence and service.

School of Arts, Sciences and Education
- BACHELOR OF SCIENCE IN PSYCHOLOGY
- BACHELOR OF SECONDARY EDUCATION
- MAJOR IN ENGLISH, MATH, SCIENCE, AND FILIPINO
- BACHELOR OF ELEMENTARY EDUCATION

School of Criminal Justice
- BACHELOR OF SCIENCE CRIMINOLOGY

School of Tourism and Hospitality Management
- BACHELOR OF SCIENCE HOSPITALITY MANAGEMENT
- BACHELOR OF SCIENCE IN TOURISM MANAGEMENT

School of Computer Information Technology and Engineering
- BACHELOR OF SCIENCE IN CIVIL ENGINEERING
- BACHELOR OF SCIENCE IN COMPUTER ENGINEERING
- BACHELOR OF SCIENCE IN INFORMATION TECHNOLOGY
- BACHELOR OF SCIENCE IN COMPUTER SCIENCE
- ASSOCIATE IN COMPUTER TECHNOLOGY

School of Business and Accountancy
- BACHELOR OF SCIENCE IN ACCOUNTANCY
- BACHELOR OF SCIENCE IN ACCOUNTING
INFORMATION SYSTEM - BACHELOR OF SCIENCE IN BUSINESS ADMINISTRATION
- MAJOR IN FINANCIAL MANAGEMENT
- MAJOR IN MARKETING
- MAJOR IN HUMAN RESOURCES MANAGEMENT
- MAJOR IN OPERATIONS MANAGEMENT
